| Initial sequence of the chimpanzee genome and comparison with the human genome. TS Mikkelsen, LDW Hillier, EE Eichler, MC Zody, DB Jaffe, SP Yang, ... Nature, 2005 | 2305* | 2005 |
| FoxOs are lineage-restricted redundant tumor suppressors and regulate endothelial cell homeostasis JH Paik, R Kollipara, G Chu, H Ji, Y Xiao, Z Ding, L Miao, Z Tothova, ... Cell 128 (2), 309-323, 2007 | 1185 | 2007 |
| Integration of brassinosteroid signal transduction with the transcription network for plant growth regulation in Arabidopsis Y Sun, XY Fan, DM Cao, W Tang, K He, JY Zhu, JX He, MY Bai, S Zhu, ... Developmental cell 19 (5), 765-777, 2010 | 892 | 2010 |
| An integrated software system for analyzing ChIP-chip and ChIP-seq data H Ji, H Jiang, W Ma, DS Johnson, RM Myers, WH Wong Nature biotechnology 26 (11), 1293-1300, 2008 | 848 | 2008 |
| TSCAN: Pseudo-time reconstruction and evaluation in single-cell RNA-seq analysis Z Ji, H Ji Nucleic acids research 44 (13), e117-e117, 2016 | 592 | 2016 |
| TCF-1-centered transcriptional network drives an effector versus exhausted CD8 T cell-fate decision Z Chen, Z Ji, SF Ngiow, S Manne, Z Cai, AC Huang, J Johnson, ... Immunity 51 (5), 840-855. e5, 2019 | 485 | 2019 |
| A genome-scale analysis of the cis-regulatory circuitry underlying sonic hedgehog-mediated patterning of the mammalian limb SA Vokes, H Ji, WH Wong, AP McMahon Genes & development 22 (19), 2651-2663, 2008 | 336 | 2008 |
| Sox17 promotes differentiation in mouse embryonic stem cells by directly regulating extraembryonic gene expression and indirectly antagonizing self-renewal KK Niakan, H Ji, R Maehr, SA Vokes, KT Rodolfa, RI Sherwood, ... Genes & development 24 (3), 312-326, 2010 | 330 | 2010 |
| Genomic characterization of Gli-activator targets in sonic hedgehog-mediated neural patterning SA Vokes, H Ji, S McCuine, T Tenzen, S Giles, S Zhong, ... Development 134 (10), 1977-1989, 2007 | 321 | 2007 |
| Mobile interspersed repeats are major structural variants in the human genome CRL Huang, AM Schneider, Y Lu, T Niranjan, P Shen, MA Robinson, ... Cell 141 (7), 1171-1182, 2010 | 297 | 2010 |
| TileMap: create chromosomal map of tiling array hybridizations H Ji, WH Wong Bioinformatics 21 (18), 3629-3636, 2005 | 294 | 2005 |
| Transcriptional programs of neoantigen-specific TIL in anti-PD-1-treated lung cancers JX Caushi, J Zhang, Z Ji, A Vaghasia, B Zhang, EHC Hsiue, BJ Mog, ... Nature 596 (7870), 126-132, 2021 | 266 | 2021 |
| A systematic evaluation of single-cell RNA-sequencing imputation methods W Hou, Z Ji, H Ji, SC Hicks Genome biology 21 (1), 1-30, 2020 | 250 | 2020 |
| Why do human diversity levels vary at a megabase scale? I Hellmann, K Prüfer, H Ji, MC Zody, S Pääbo, SE Ptak Genome research 15 (9), 1222-1231, 2005 | 193 | 2005 |
| Cell-Type Independent MYC Target Genes Reveal a Primordial Signature Involved in Biomass Accumulation H Ji, G Wu, X Zhan, A Nolan, C Koh, A De Marzo, HM Doan, J Fan, ... PloS one 6 (10), e26057, 2011 | 192 | 2011 |
| Construction of human activity‐based phosphorylation networks RH Newman, J Hu, HS Rho, Z Xie, C Woodard, J Neiswinger, C Cooper, ... Molecular systems biology 9 (1), 655, 2013 | 186 | 2013 |
| TRIB2 acts downstream of Wnt/TCF in liver cancer cells to regulate YAP and C/EBPα function J Wang, JS Park, Y Wei, M Rajurkar, JL Cotton, Q Fan, BC Lewis, H Ji, ... Molecular cell 51 (2), 211-225, 2013 | 180 | 2013 |
| ATAC-Seq analysis reveals a widespread decrease of chromatin accessibility in age-related macular degeneration J Wang, C Zibetti, P Shang, SR Sripathi, P Zhang, M Cano, T Hoang, ... Nature communications 9 (1), 1364, 2018 | 159 | 2018 |
| Immunomodulation-accelerated neuronal regeneration following selective rod photoreceptor cell ablation in the zebrafish retina DT White, S Sengupta, MT Saxena, Q Xu, J Hanes, D Ding, H Ji, ... Proceedings of the National Academy of Sciences 114 (18), E3719-E3728, 2017 | 145 | 2017 |
| MLL fusion proteins preferentially regulate a subset of wild-type MLL target genes in the leukemic genome Q Wang, G Wu, S Mi, F He, J Wu, J Dong, RT Luo, R Mattison, ... Blood 117 (25), 6895-6905, 2011 | 138 | 2011 |
Zhicheng Ji, PhDAssistant Professor of Biostatistics and Bioinformatics, Duke University School of MedicineVerified email at duke.edu
