| Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases AS Rifaioglu, H Atas, MJ Martin, R Cetin-Atalay, V Atalay, T Doğan Briefings in bioinformatics 20 (5), 1878-1912, 2019 | 480 | 2019 |
| The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20, 1-23, 2019 | 397 | 2019 |
| DEEPScreen: high performance drug–target interaction prediction with convolutional neural networks using 2-D structural compound representations AS Rifaioglu, E Nalbat, V Atalay, MJ Martin, R Cetin-Atalay, T Doğan Chemical science 11 (9), 2531-2557, 2020 | 199 | 2020 |
| Silhouette-based 3-D model reconstruction from multiple images AY Mulayim, U Yilmaz, V Atalay IEEE Transactions on Systems, Man, and Cybernetics, Part B (Cybernetics) 33 …, 2003 | 156 | 2003 |
| ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature A Dalkiran, AS Rifaioglu, MJ Martin, R Cetin-Atalay, V Atalay, T Doğan BMC bioinformatics 19, 1-13, 2018 | 155 | 2018 |
| DEEPred: automated protein function prediction with multi-task feed-forward deep neural networks A Sureyya Rifaioglu, T Doğan, M Jesus Martin, R Cetin-Atalay, V Atalay Scientific reports 9 (1), 7344, 2019 | 151 | 2019 |
| Data stream clustering: a review A Zubaroğlu, V Atalay Artificial Intelligence Review 54 (2), 1201-1236, 2021 | 149 | 2021 |
| Feature extraction and classification of blood cells for an automated differential blood count system G Ongun, U Halici, K Leblebicioglu, V Atalay, M Beksaç, S Beksaç IJCNN'01. International joint conference on neural networks. Proceedings …, 2001 | 135 | 2001 |
| Projection based method for segmentation of human face and its evaluation S Baskan, MM Bulut, V Atalay Pattern Recognition Letters 23 (14), 1623-1629, 2002 | 118 | 2002 |
| An automated differential blood count system G Ongun, U Halici, K Leblebicioglu, V Atalay, M Beksac, S Beksac 2001 Conference Proceedings of the 23rd Annual International Conference of …, 2001 | 117 | 2001 |
| The random neural network model for texture generation V Atalay, E Gelenbe, N Yalabik International Journal of Pattern Recognition and Artificial Intelligence 6 …, 1992 | 117 | 1992 |
| Parallel algorithm for colour texture generation using the random neural network model V Atalay, E Gelenbe International Journal of Pattern Recognition and Artificial Intelligence 6 …, 1992 | 110 | 1992 |
| MDeePred: novel multi-channel protein featurization for deep learning-based binding affinity prediction in drug discovery AS Rifaioglu, R Cetin Atalay, D Cansen Kahraman, T Doğan, M Martin, ... Bioinformatics 37 (5), 693-704, 2021 | 98 | 2021 |
| PCA for gender estimation: Which eigenvectors contribute? K Balci, V Atalay 2002 International Conference on Pattern Recognition 3, 363-366, 2002 | 89 | 2002 |
| Crowdsourced mapping of unexplored target space of kinase inhibitors Nature Communications 12 (1), 1-18, 2021 | 72* | 2021 |
| A hierarchical representation of form documents for identification and retrieval P Duygulu, V Atalay International Journal on Document Analysis and Recognition 5, 17-27, 2002 | 64 | 2002 |
| Repulsive attractive network for baseline extraction on document images E Öztop, AY Mülayim, V Atalay, F Yarman-Vural Signal Processing 75 (1), 1-10, 1999 | 59 | 1999 |
| Computer vision based mouse A Erdem, E Erdem, Y Yardimci, V Atalay, AE Cetin 2002 IEEE International Conference on Acoustics, Speech, and Signal …, 2002 | 46 | 2002 |
| Implicit motif distribution based hybrid computational kernel for sequence classification V Atalay, R Cetin-Atalay Bioinformatics 21 (8), 1429-1436, 2005 | 38 | 2005 |
| Vision-based single-stroke character recognition for wearable computing OF Ozer, O Ozun, CO Tuzel, V Atalay, AE Cetin IEEE Intelligent Systems 16 (3), 33-37, 2001 | 38 | 2001 |
Rengul Cetin AtalayUniversity of ChicagoVerified email at uchicago.edu
