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Thomas Erol Tavolara
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Identifying tumor in pancreatic neuroendocrine neoplasms from Ki67 images using transfer learning
MKK Niazi, TE Tavolara, V Arole, DJ Hartman, L Pantanowitz, MN Gurcan
PloS one 13 (4), e0195621, 2018
522018
Attention2majority: Weak multiple instance learning for regenerative kidney grading on whole slide images
Z Su, TE Tavolara, G Carreno-Galeano, SJ Lee, MN Gurcan, MKK Niazi
Medical Image Analysis 79, 102462, 2022
302022
Deep learning predicts gene expression as an intermediate data modality to identify susceptibility patterns in Mycobacterium tuberculosis infected Diversity Outbred mice
TE Tavolara, MKK Niazi, AC Gower, M Ginese, G Beamer, MN Gurcan
EBioMedicine 67, 2021
272021
A modular cGAN classification framework: Application to colorectal tumor detection
TE Tavolara, MKK Niazi, V Arole, W Chen, W Frankel, MN Gurcan
Scientific reports 9 (1), 18969, 2019
272019
Automatic discovery of clinically interpretable imaging biomarkers for Mycobacterium tuberculosis supersusceptibility using deep learning
TE Tavolara, MKK Niazi, M Ginese, C Piedra-Mora, DM Gatti, G Beamer, ...
EBioMedicine 62, 2020
252020
Identification of difficult to intubate patients from frontal face images using an ensemble of deep learning models
TE Tavolara, MN Gurcan, S Segal, MKK Niazi
Computers in biology and medicine 136, 104737, 2021
242021
CXCL1: A new diagnostic biomarker for human tuberculosis discovered using Diversity Outbred mice
D Koyuncu, MKK Niazi, T Tavolara, C Abeijon, ML Ginese, Y Liao, C Mark, ...
PLoS pathogens 17 (8), e1009773, 2021
222021
Semantic segmentation to identify bladder layers from H&E Images
MKK Niazi, E Yazgan, TE Tavolara, W Li, CT Lee, A Parwani, MN Gurcan
Diagnostic Pathology 15, 1-8, 2020
142020
Contrastive multiple instance learning: an unsupervised framework for learning slide-level representations of whole slide histopathology images without labels
TE Tavolara, MN Gurcan, MKK Niazi
Cancers 14 (23), 5778, 2022
132022
Automated image analysis methodologies to compute bioink printability
M Uzun-Per, GJ Gillispie, TE Tavolara, JJ Yoo, A Atala, MN Gurcan, ...
Advanced Engineering Materials 23 (4), 2000900, 2021
122021
MP58-06 automated staging of t1 bladder cancer using digital pathologic h&e images: a deep learning approach
MKK Niazi, T Tavolara, V Arole, A Parwani, C Lee, M Gurcan
The Journal of urology 199 (4S), e775-e775, 2018
102018
Automated T1 bladder risk stratification based on depth of lamina propria invasion from H and E tissue biopsies: a deep learning approach
MKK Niazi, TE Tavolara, V Arole, AV Parwani, C Lee, MN Gurcan
Medical Imaging 2018: Digital Pathology 10581, 134-142, 2018
82018
Generalization of tumor identification algorithms
MKK Niazi, TE Tavolara, C Senaras, G Tozbikian, DJ Hartman, V Arole, ...
Medical Imaging 2019: Digital Pathology 10956, 208-215, 2019
72019
Segmentation of mycobacterium tuberculosis bacilli clusters from acid-fast stained lung biopsies: a deep learning approach
TE Tavolara, MKK Niazi, G Beamer, MN Gurcan
Medical Imaging 2020: Digital Pathology 11320, 92-98, 2020
62020
Colorectal tumor identification by transferring knowledge from pan-cytokeratin to H&E
TE Tavolara, MKK Niazi, W Chen, W Frankel, MN Gurcan
Medical Imaging 2019: Digital Pathology 10956, 229-237, 2019
52019
BCR-Net: A deep learning framework to predict breast cancer recurrence from histopathology images
Z Su, MKK Niazi, TE Tavolara, S Niu, GH Tozbikian, R Wesolowski, ...
PLoS One 18 (4), e0283562, 2023
42023
One label is all you need: Interpretable AI-enhanced histopathology for oncology
TE Tavolara, Z Su, MN Gurcan, MKK Niazi
Seminars in Cancer Biology, 2023
32023
Automatic generation of the ground truth for tumor budding using H&E stained slides
TE Tavolara, A Dutta, MV Burks, W Chen, W Frankel, MN Gurcan, ...
Medical Imaging 2022: Digital and Computational Pathology 12039, 40-46, 2022
32022
Predicting HER2 scores from registered HER2 and H&E images
TE Tavolara, MKK Niazi, G Tozbikian, R Wesolowski, MN Gurcan
Medical Imaging 2022: Digital and Computational Pathology 12039, 60-68, 2022
32022
Background detection affects downstream classification of Camelyon16 whole slide images
TE Tavolara, MKK Niazi, MN Gurcan
Medical Imaging 2023: Digital and Computational Pathology 12471, 164-169, 2023
22023
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