Matthew Slattery
Matthew Slattery
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ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ...
Genome research 22 (9), 1813-1831, 2012
Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins
M Slattery, T Riley, P Liu, N Abe, P Gomez-Alcala, I Dror, T Zhou, R Rohs, ...
Cell 147 (6), 1270-1282, 2011
Absence of a simple code: how transcription factors read the genome
M Slattery, T Zhou, L Yang, ACD Machado, R Gordân, R Rohs
Trends in biochemical sciences 39 (9), 381-399, 2014
Disentangling the many layers of eukaryotic transcriptional regulation
KM Lelli, M Slattery, RS Mann
Annual review of genetics 46, 43-68, 2012
Transcription factor choice in the Hippo signaling pathway: homothorax and yorkie regulation of the microRNA bantam in the progenitor domain of the Drosophila eye imaginal disc
HW Peng, M Slattery, RS Mann
Genes & development 23 (19), 2307-2319, 2009
Comparative analysis of regulatory information and circuits across distant species
AP Boyle, CL Araya, C Brdlik, P Cayting, C Cheng, Y Cheng, K Gardner, ...
Nature 512 (7515), 453-456, 2014
Systematic evaluation of factors influencing ChIP-seq fidelity
Y Chen, N Negre, Q Li, JO Mieczkowska, M Slattery, T Liu, Y Zhang, ...
Nature methods 9 (6), 609-614, 2012
Deconvolving the recognition of DNA shape from sequence
N Abe, I Dror, L Yang, M Slattery, T Zhou, HJ Bussemaker, R Rohs, ...
Cell 161 (2), 307-318, 2015
Genome-wide association of Yorkie with chromatin and chromatin-remodeling complexes
H Oh, M Slattery, L Ma, A Crofts, KP White, RS Mann, KD Irvine
Cell reports 3 (2), 309-318, 2013
A survey of 6,300 genomic fragments for cis-regulatory activity in the imaginal discs of Drosophila melanogaster
A Jory, C Estella, MW Giorgianni, M Slattery, TR Laverty, GM Rubin, ...
Cell reports 2 (4), 1014-1024, 2012
Chemical inhibition of the TFIIH-associated kinase Cdk7/Kin28 does not impair global mRNA synthesis
EI Kanin, RT Kipp, C Kung, M Slattery, A Viale, S Hahn, KM Shokat, ...
Proceedings of the National Academy of Sciences 104 (14), 5812-5817, 2007
ACE2 is required for daughter cell-specific G1 delay in Saccharomyces cerevisiae
TL Laabs, DD Markwardt, MG Slattery, LL Newcomb, DJ Stillman, ...
Proceedings of the National Academy of Sciences 100 (18), 10275-10280, 2003
Glucose Regulation of Saccharomyces cerevisiae Cell Cycle Genes
LL Newcomb, JA Diderich, MG Slattery, W Heideman
Eukaryotic Cell 2 (1), 143-149, 2003
Control of mitochondrial structure and function by the Yorkie/YAP oncogenic pathway
R Nagaraj, S Gururaja-Rao, KT Jones, M Slattery, N Negre, D Braas, ...
Genes & development 26 (18), 2027-2037, 2012
Genome-wide tissue-specific occupancy of the Hox protein Ultrabithorax and Hox cofactor Homothorax in Drosophila
M Slattery, L Ma, N Négre, KP White, RS Mann
PloS one 6 (4), e14686, 2011
Stb3 binds to ribosomal RNA processing element motifs that control transcriptional responses to growth in Saccharomyces cerevisiae
D Liko, MG Slattery, W Heideman
Journal of Biological Chemistry 282 (36), 26623-26628, 2007
Transcription factor networks in Drosophila melanogaster
DY Rhee, DY Cho, B Zhai, M Slattery, L Ma, J Mintseris, CY Wong, ...
Cell reports 8 (6), 2031-2043, 2014
SELEX-seq: a method for characterizing the complete repertoire of binding site preferences for transcription factor complexes
TR Riley, M Slattery, N Abe, C Rastogi, D Liu, RS Mann, HJ Bussemaker
Hox Genes, 255-278, 2014
Yorkie promotes transcription by recruiting a histone methyltransferase complex
H Oh, M Slattery, L Ma, KP White, RS Mann, KD Irvine
Cell reports 8 (2), 449-459, 2014
Beyond antioxidant genes in the ancient Nrf2 regulatory network
SE Lacher, JS Lee, X Wang, MR Campbell, DA Bell, M Slattery
Free Radical Biology and Medicine 88, 452-465, 2015
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