| Interaction prediction and classification of PDZ domains S Kalyoncu, O Keskin, A Gursoy BMC bioinformatics 11, 1-11, 2010 | 59 | 2010 |
| Phage display derived therapeutic antibodies have enriched aliphatic content: insights for developability issues NE Kaleli, M Karadag, S Kalyoncu Proteins: Structure, Function, and Bioinformatics 87 (7), 607-618, 2019 | 28 | 2019 |
| Protein engineering approaches for antibody fragments: directed evolution and rational design approaches M Arslan, D Karadağ, S Kalyoncu Turkish Journal of Biology 43 (1), 1-12, 2019 | 27 | 2019 |
| Structural and biophysical characterization of an epitope-specific engineered Fab fragment and complexation with membrane proteins: implications for co-crystallization JL Johnson, KC Entzminger, J Hyun, S Kalyoncu, DP Heaner, IA Morales, ... Acta Crystallographica Section D: Biological Crystallography 71 (4), 896-906, 2015 | 18 | 2015 |
| Both positional and chemical variables control in vitro proteolytic cleavage of a presenilin ortholog SH Naing, S Kalyoncu, DM Smalley, H Kim, X Tao, JB George, AP Jonke, ... Journal of Biological Chemistry 293 (13), 4653-4663, 2018 | 17 | 2018 |
| Catalytic properties of intramembrane aspartyl protease substrate hydrolysis evaluated using a FRET peptide cleavage assay SH Naing, KM Vukoti, JE Drury, JL Johnson, S Kalyoncu, SE Hill, ... ACS Chemical Biology 10 (9), 2166-2174, 2015 | 15 | 2015 |
| Enzymatic hydrolysis by transition-metal-dependent nucleophilic aromatic substitution S Kalyoncu, DP Heaner Jr, Z Kurt, CM Bethel, CU Ukachukwu, ... Nature chemical biology 12 (12), 1031-1036, 2016 | 12 | 2016 |
| Effects of protein engineering and rational mutagenesis on crystal lattice of single chain antibody fragments S Kalyoncu, J Hyun, JC Pai, JL Johnson, K Entzminger, A Jain, ... Proteins: Structure, Function, and Bioinformatics 82 (9), 1884-1895, 2014 | 12 | 2014 |
| Roles of matrix metalloproteinases in the cornea: A special focus on macular corneal dystrophy SG Kaya, S Inanc-Surer, G Cakan-Akdogan, G Oktay, CA Utine, ... Medicine in Drug Discovery 11, 100095, 2021 | 11 | 2021 |
| Physicochemical determinants of antibody-protein interactions M Karadag, M Arslan, NE Kaleli, S Kalyoncu Advances in Protein Chemistry and Structural Biology 121, 85-114, 2020 | 9 | 2020 |
| Effect of non-repetitive linker on in vitro and in vivo properties of an anti-VEGF scFv M Arslan, M Karadag, E Onal, E Gelinci, G Cakan-Akdogan, S Kalyoncu Scientific Reports 12 (1), 5449, 2022 | 8 | 2022 |
| CENP-A nucleosome is a sensitive allosteric scaffold for DNA and chromatin factors D Doğan, M Arslan, T Uluçay, S Kalyoncu, S Dimitrov, S Kale Journal of molecular biology 433 (6), 166789, 2021 | 6 | 2021 |
| Conformational changes in a Vernier zone region: Implications for antibody dual specificity M Arslan, D Karadag, S Kalyoncu Proteins: Structure, Function, and Bioinformatics 88 (11), 1447-1457, 2020 | 6 | 2020 |
| Sensitive detection of glucagon aggregation using amyloid fibril‐specific antibodies SD Stimple, S Kalyoncu, AA Desai, JE Mogensen, LT Spang, DJ Asgreen, ... Biotechnology and Bioengineering 116 (8), 1868-1877, 2019 | 5 | 2019 |
| Process development for an effective COVID-19 vaccine candidate harboring recombinant SARS-CoV-2 delta plus receptor binding domain produced by Pichia pastoris S Kalyoncu, S Yilmaz, AZ Kuyucu, D Sayili, O Mert, H Soyturk, S Gullu, ... Scientific reports 13 (1), 5224, 2023 | 2 | 2023 |
| Directed evolution of conformation‐specific antibodies for sensitive detection of polypeptide aggregates in therapeutic drug formulations W Lou, SD Stimple, AA Desai, EK Makowski, S Kalyoncu, JE Mogensen, ... Biotechnology and Bioengineering 118 (2), 797-808, 2021 | 2 | 2021 |
| Lessons from an α-Helical Membrane Enzyme: Expression, Purification, and Detergent Optimization for Biophysical and Structural Characterization JL Johnson, S Kalyoncu, RL Lieberman Heterologous Expression of Membrane Proteins: Methods and Protocols, 281-301, 2016 | 2 | 2016 |
| Engineering of conserved residues near antibody heavy chain complementary determining region 3 (HCDR3) improves both affinity and stability M Arslan, T Uluçay, S Kale, S Kalyoncu Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1871 (4), 140915, 2023 | 1 | 2023 |
| Biomarkers of NRF2 signalling: Current status and future challenges C Morgenstern, I Lastres-Becker, BC Demirdöğen, VM Costa, A Daiber, ... Redox Biology, 103134, 2024 | | 2024 |
| Zebrafish carbohydrate sulfotransferase 6 (chst6) mutants provide a preclinical model for macular corneal dystrophy M Basol, H Ozaktas, S Kalyoncu, CA Utine, G Cakan-Akdogan | | 2024 |
