| ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events L Denti, R Rizzi, S Beretta, GD Vedova, M Previtali, P Bonizzoni BMC bioinformatics 19, 1-21, 2018 | 42 | 2018 |
| MALVA: genotyping by Mapping-free ALlele detection of known VAriants L Denti, M Previtali, G Bernardini, A Schönhuth, P Bonizzoni Iscience 18, 20-27, 2019 | 28 | 2019 |
| Triplet-based similarity score for fully multilabeled trees with poly-occurring labels S Ciccolella, G Bernardini, L Denti, P Bonizzoni, M Previtali, ... Bioinformatics 37 (2), 178-184, 2021 | 16 | 2021 |
| SVDSS: structural variation discovery in hard-to-call genomic regions using sample-specific strings from accurate long reads L Denti, P Khorsand, P Bonizzoni, F Hormozdiari, R Chikhi Nature Methods 20 (4), 550-558, 2023 | 12* | 2023 |
| Mapping RNA-seq data to a transcript graph via approximate pattern matching to a hypertext S Beretta, P Bonizzoni, L Denti, M Previtali, R Rizzi Algorithms for Computational Biology: 4th International Conference, AlCoB …, 2017 | 12 | 2017 |
| Shark: fishing relevant reads in an RNA-Seq sample L Denti, Y Pirola, M Previtali, T Ceccato, G Della Vedova, R Rizzi, ... Bioinformatics 37 (4), 464-472, 2021 | 9 | 2021 |
| Comparative genome analysis using sample-specific string detection in accurate long reads P Khorsand, L Denti, Human Genome Structural Variant Consortium, ... Bioinformatics advances 1 (1), vbab005, 2021 | 9 | 2021 |
| MALVIRUS: an integrated application for viral variant analysis S Ciccolella, L Denti, P Bonizzoni, G Della Vedova, Y Pirola, M Previtali BMC bioinformatics 22 (Suppl 15), 625, 2021 | 8* | 2021 |
| Graph theory and definitions S Beretta, L Denti, M Previtali Encyclopedia of Bioinformatics and Computational Biology: ABC of …, 2019 | 4 | 2019 |
| RecGraph: adding recombinations to sequence-to-graph alignments J Avila, P Bonizzoni, S Ciccolella, G Della Vedova, L Denti, D Monti, ... bioRxiv, 2022.10. 27.513962, 2022 | 1 | 2022 |
| Network properties S Beretta, L Denti, M Previtali Encyclopedia of Bioinformatics and Computational Biology: ABC of …, 2019 | 1 | 2019 |
| Differential quantification of alternative splicing events on spliced pangenome graphs S Ciccolella, D Cozzi, G Della Vedova, S Kuria, P Bonizzoni, L Denti bioRxiv, 2023.11. 06.565751, 2023 | | 2023 |
| ESGq: Alternative Splicing events quantification across conditions based on Event Splicing Graphs D Cozzi, P Bonizzoni, L Denti bioRxiv, 2023.07. 05.547757, 2023 | | 2023 |
| Alignment-Free Genotyping of Known Variations with MALVA G Bernardini, L Denti, M Previtali Variant Calling: Methods and Protocols, 247-256, 2022 | | 2022 |
| Algorithms for analyzing genetic variability from Next-Generation Sequencing data L Denti Università degli Studi di Milano-Bicocca, 2020 | | 2020 |
| Supplemental material for Shark: fishing relevant reads in an RNA-Seq sample L Denti, Y Pirola, M Previtali, T Ceccato, G Della Vedova, R Rizzi, ... | | |
