Simone Linz

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Charles SempleProfessor of Mathematics, University of CanterburyVerified email at canterbury.ac.nz
Katherine St. JohnCity University of New YorkVerified email at hunter.cuny.edu
Steven KelkAssociate professor, Department of Data Science and Knowledge Engineering, University of MaastrichtVerified email at maastrichtuniversity.nl
Magnus BordewichProfessor of Computer Science, Durham UniversityVerified email at durham.ac.uk
Leo van IerselAssociate professor, TU DelftVerified email at tudelft.nl
Karsten HillerUniversity of BraunschweigVerified email at tu-braunschweig.de
Dieter JahnProfessorof Microbiology Technische Universität BraunschweigVerified email at tu-bs.de
Janosch DöckerVerified email at uni-tuebingen.de
Daniel H. HusonProfessor of Algorithms in Bioinformatics, University of TuebingenVerified email at uni-tuebingen.de
Arndt von HaeselerMax Perutz Labs University of Vienna, Medical University of ViennaVerified email at univie.ac.at
Celine ScornavaccaInstitut des Sciences de l'Evolution, MontpellierVerified email at umontpellier.fr
Nela LekicPhD candidate, Maastricht UniversityVerified email at maastrichtuniversity.nl
Leen StougieSenior Researcher CWI, Prof. of Operations Research Vrije Universiteit, AmsterdamVerified email at cwi.nl
Michael J. DinneenComputer Science, University of Auckland, New ZealandVerified email at cs.auckland.ac.nz
Prof. Mike SteelUniversity of Canterbury, New ZealandVerified email at canterbury.ac.nz
Michael J. SandersonProfessor of Ecology and Evolutionary Biology, University of ArizonaVerified email at email.arizona.edu
taoyang wuLecturer of Computational Biology, University of East AngliaVerified email at uea.ac.uk
Tanja StadlerETH ZurichVerified email at env.ethz.ch
Nguyet TranThe University of AucklandVerified email at aucklanduni.ac.nz
Maria Luisa BonetLSI, UPCVerified email at lsi.upc.edu

Simone Linz

Senior Lecturer, School of Computer Science, University of Auckland, New Zealand

Verified email at auckland.ac.nz - Homepage

algorithms combinatorics phylogenetics


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PRODORIC: prokaryotic database of gene regulation R Münch, K Hiller, H Barg, D Heldt, S Linz, E Wingender, D Jahn Nucleic acids research 31 (1), 266-269, 2003	292	2003
A reduction algorithm for computing the hybridization number of two trees M Bordewich, S Linz, KS John, C Semple Evolutionary Bioinformatics 3, 117693430700300017, 2007	58	2007
Quantifying hybridization in realistic time J Collins, S Linz, C Semple Journal of Computational Biology 18 (10), 1305-1318, 2011	45	2011
A likelihood framework to measure horizontal gene transfer S Linz, A Radtke, A Von Haeseler Molecular biology and evolution 24 (6), 1312-1319, 2007	44	2007
Hybridization in nonbinary trees S Linz, C Semple IEEE/ACM Transactions on Computational Biology and Bioinformatics 6 (1), 30-45, 2008	37	2008
Cycle killer... qu'est-ce que c'est? On the comparative approximability of hybridization number and directed feedback vertex set S Kelk, L Van Iersel, N Lekic, S Linz, C Scornavacca, L Stougie SIAM journal on discrete mathematics 26 (4), 1635-1656, 2012	27	2012
Identifying a species tree subject to random lateral gene transfer M Steel, S Linz, DH Huson, MJ Sanderson Journal of theoretical biology 322, 81-93, 2013	24	2013
Phylogenetic networks that display a tree twice P Cordue, S Linz, C Semple Bulletin of mathematical biology 76 (10), 2664-2679, 2014	23	2014
A quadratic kernel for computing the hybridization number of multiple trees L Van Iersel, S Linz Information Processing Letters 113 (9), 318-323, 2013	23	2013
A cluster reduction for computing the subtree distance between phylogenies S Linz, C Semple Annals of combinatorics 15 (3), 465-484, 2011	23	2011
Lost in space? Generalising subtree prune and regraft to spaces of phylogenetic networks M Bordewich, S Linz, C Semple Journal of theoretical biology 423, 1-12, 2017	21	2017
Spaces of phylogenetic networks from generalized nearest-neighbor interchange operations KT Huber, S Linz, V Moulton, T Wu Journal of Mathematical Biology 72 (3), 699-725, 2016	20	2016
Counting trees in a phylogenetic network is\# P-complete S Linz, KS John, C Semple SIAM journal on computing 42 (4), 1768-1776, 2013	20	2013
Autumn Algorithm–Computation of Hybridization Networks for Realistic Phylogenetic Trees D Huson, S Linz IEEE/ACM transactions on computational biology and bioinformatics 15, 398-410, 2018	18*	2018
Cherry picking: a characterization of the temporal hybridization number for a set of phylogenies PJ Humphries, S Linz, C Semple Bulletin of mathematical biology 75 (10), 1879-1890, 2013	14	2013
A first step toward computing all hybridization networks for two rooted binary phylogenetic trees C Scornavacca, S Linz, B Albrecht Journal of Computational Biology 19 (11), 1227-1242, 2012	14	2012
Analyzing and reconstructing reticulation networks under timing constraints S Linz, C Semple, T Stadler Journal of mathematical biology 61 (5), 715-737, 2010	14	2010
On the complexity of computing the temporal hybridization number for two phylogenies PJ Humphries, S Linz, C Semple Discrete Applied Mathematics 161 (7-8), 871-880, 2013	11	2013
Attaching leaves and picking cherries to characterise the hybridisation number for a set of phylogenies S Linz, C Semple Advances in Applied Mathematics 105, 102-129, 2019	10	2019
Reticulation in evolution S Linz PhD thesis, Heinrich-Heine Universität, 2008	10	2008

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