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Melissa Cline
Melissa Cline
Associate Research Scientist, UC Santa Cruz Genomics Institute
Verified email at ucsc.edu
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
137742012
Integration of biological networks and gene expression data using Cytoscape
MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ...
Nature protocols 2 (10), 2366-2382, 2007
27172007
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
18882014
The UCSC genome browser database: update 2011
PA Fujita, B Rhead, AS Zweig, AS Hinrichs, D Karolchik, MS Cline, ...
Nucleic acids research 39 (suppl_1), D876-D882, 2010
12752010
Toil enables reproducible, open source, big biomedical data analyses
J Vivian, AA Rao, FA Nothaft, C Ketchum, J Armstrong, A Novak, J Pfeil, ...
Nature biotechnology 35 (4), 314-316, 2017
9752017
The UCSC Genome Browser database: extensions and updates 2013
LR Meyer, AS Zweig, AS Hinrichs, D Karolchik, RM Kuhn, M Wong, ...
Nucleic acids research 41 (D1), D64-D69, 2012
8992012
The UCSC genome browser database: 2014 update
D Karolchik, GP Barber, J Casper, H Clawson, MS Cline, M Diekhans, ...
Nucleic acids research 42 (D1), D764-D770, 2014
7692014
NetAffx: affymetrix probeset annotations
G Liu, AE Loraine, R Shigeta, M Cline, J Cheng, SA Chervitz, D Kulp, ...
Proceedings of the 2002 ACM symposium on Applied computing, 147-150, 2002
6332002
The UCSC genome browser database: 2008 update
D Karolchik, RM Kuhn, R Baertsch, GP Barber, H Clawson, M Diekhans, ...
Nucleic acids research 36 (suppl_1), D773-D779, 2007
5962007
Nova regulates brain-specific splicing to shape the synapse
J Ule, A Ule, J Spencer, A Williams, JS Hu, M Cline, H Wang, T Clark, ...
Nature genetics 37 (8), 844-852, 2005
5912005
RBPmap: a web server for mapping binding sites of RNA-binding proteins
I Paz, I Kosti, M Ares Jr, M Cline, Y Mandel-Gutfreund
Nucleic acids research 42 (W1), W361-W367, 2014
4812014
The UCSC Genome Browser database: extensions and updates 2011
TR Dreszer, D Karolchik, AS Zweig, AS Hinrichs, BJ Raney, RM Kuhn, ...
Nucleic acids research 40 (D1), D918-D923, 2012
4132012
Aberrant alternative splicing and extracellular matrix gene expression in mouse models of myotonic dystrophy
H Du, MS Cline, RJ Osborne, DL Tuttle, TA Clark, JP Donohue, MP Hall, ...
Nature structural & molecular biology 17 (2), 187-193, 2010
3702010
An encyclopedia of mouse DNA elements (Mouse ENCODE)
Mouse ENCODE Consortium, JA Stamatoyannopoulos, M Snyder, ...
Genome biology 13, 1-5, 2012
3672012
Muscleblind-like 2-mediated alternative splicing in the developing brain and dysregulation in myotonic dystrophy
K Charizanis, KY Lee, R Batra, M Goodwin, C Zhang, Y Yuan, L Shiue, ...
Neuron 75 (3), 437-450, 2012
3652012
Integrated molecular characterization of uterine carcinosarcoma
AD Cherniack, H Shen, V Walter, C Stewart, BA Murray, R Bowlby, X Hu, ...
Cancer cell 31 (3), 411-423, 2017
3502017
ENCODE whole-genome data in the UCSC Genome Browser: update 2012
KR Rosenbloom, TR Dreszer, JC Long, VS Malladi, CA Sloan, BJ Raney, ...
Nucleic acids research 40 (D1), D912-D917, 2012
3242012
The UCSC cancer genomics browser: update 2015
M Goldman, B Craft, T Swatloski, M Cline, O Morozova, M Diekhans, ...
Nucleic acids research 43 (D1), D812-D817, 2015
2962015
Exploring TCGA pan-cancer data at the UCSC cancer genomics browser
MS Cline, B Craft, T Swatloski, M Goldman, S Ma, D Haussler, J Zhu
Scientific reports 3 (1), 2652, 2013
2882013
Alternative splicing regulates mouse embryonic stem cell pluripotency and differentiation
N Salomonis, CR Schlieve, L Pereira, C Wahlquist, A Colas, AC Zambon, ...
Proceedings of the National Academy of Sciences 107 (23), 10514-10519, 2010
2572010
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