|Inferring causal molecular networks: empirical assessment through a community-based effort|
SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ...
Nature methods 13 (4), 310-318, 2016
|Transcriptome analysis of developing lens reveals abundance of novel transcripts and extensive splicing alterations|
R Srivastava, G Budak, S Dash, SA Lachke, SC Janga
Scientific reports 7 (1), 1-17, 2017
|Reconstruction of the temporal signaling network in Salmonella-infected human cells|
G Budak, O Eren Ozsoy, Y Aydin Son, T Can, N Tuncbag
Frontiers in microbiology 6, 730, 2015
|Express: A database of transcriptome profiles encompassing known and novel transcripts across multiple development stages in eye tissues|
G Budak, S Dash, R Srivastava, SA Lachke, SC Janga
Experimental eye research 168, 57-68, 2018
|Seten: a tool for systematic identification and comparison of processes, phenotypes, and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles|
G Budak, R Srivastava, SC Janga
RNA 23 (6), 836-846, 2017
|precisionFDA Truth Challenge V2: Calling variants from short-and long-reads in difficult-to-map regions|
ND Olson, J Wagner, J McDaniel, SH Stephens, ST Westreich, ...
|ExSurv: A web resource for prognostic analyses of exons across human cancers using clinical transcriptomes|
S Hashemikhabir, G Budak, SC Janga
Cancer informatics 15, CIN. S39367, 2016
|M4B: A novel method for designing and ordering of the genetic devices|
S Hashemikhabir, G Ersoy, G Oguz, B Yaldiz, Y Tuncel, G Budak, ...
2012 7th International Symposium on Health Informatics and Bioinformatics …, 2012