Minh Duc Cao
Minh Duc Cao
Principal Machine Learning Scientist at Gritstone Oncology
Verified email at gritstone.com
Title
Cited by
Cited by
Year
A simple statistical algorithm for biological sequence compression
MD Cao, TI Dix, L Allison, C Mears
Data Compression Conference, 2007. DCC'07, 43-52, 2007
2242007
Scaffolding and completing genome assemblies in real-time with nanopore sequencing
MD Cao, SH Nguyen, D Ganesamoorthy, AG Elliott, MA Cooper, ...
Nature communications 8 (1), 1-10, 2017
882017
Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning
H Teng, MD Cao, MB Hall, T Duarte, S Wang, LJM Coin
GigaScience 7 (5), giy037, 2018
752018
Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION TM sequencing
LJMC Minh Duc Cao, Devika Ganesamoorthy, Alysha G Elliott, Huihui Zhang ...
GigaScience 5 (1), 26, 2016
68*2016
Inferring short tandem repeat variation from paired-end short reads
MD Cao, E Tasker, K Willadsen, M Imelfort, S Vishwanathan, ...
Nucleic acids research 42 (3), e16-e16, 2014
532014
Combining contents and citations for scientific document classification
M Cao, X Gao
AI 2005: Advances in artificial intelligence, 143-152, 2005
412005
Multifactorial chromosomal variants regulate polymyxin resistance in extensively drug-resistant Klebsiella pneumoniae
ME Pitt, AG Elliott, MD Cao, D Ganesamoorthy, I Karaiskos, ...
Microbial genomics 4 (3), 2018
262018
Realtime analysis and visualization of MinION sequencing data with npReader
MD Cao, D Ganesamoorthy, MA Cooper, LJM Coin
Bioinformatics 32 (5), 764-766, 2016
232016
npInv: accurate detection and genotyping of inversions using long read sub-alignment
H Shao, D Ganesamoorthy, T Duarte, MD Cao, CJ Hoggart, LJM Coin
BMC bioinformatics 19 (1), 1-13, 2018
212018
Sequencing technologies and tools for short tandem repeat variation detection
MD Cao, S Balasubramanian, M Bodén
Briefings in bioinformatics 16 (2), 193-204, 2015
212015
Software tools and algorithms for biological systems
H Arabnia, QN Tran
Springer, 2011
212011
Complete genome sequence of Klebsiella quasipneumoniae subsp. similipneumoniae strain ATCC 700603
AG Elliott, D Ganesamoorthy, L Coin, MA Cooper, MD Cao
Genome announcements 4 (3), 2016
202016
A genome alignment algorithm based on compression
M Cao, T Dix, L Allison
BMC bioinformatics 11 (1), 599, 2010
202010
Computing substitution matrices for genomic comparative analysis
M Cao, T Dix, L Allison
Advances in Knowledge Discovery and Data Mining, 647-655, 2009
102009
Statistical enrichment of epigenetic states around triplet repeats that can undergo expansions
A Essebier, P Vera Wolf, MD Cao, BJ Carroll, S Balasubramanian, ...
Frontiers in neuroscience 10, 92, 2016
92016
Experimental evaluation of a lexicon-and corpus-based ensemble for multi-way sentiment analysis
MD Cao, I Zukerman
Proceedings of the Australasian Language Technology Association Workshop …, 2012
82012
Octapeptin C4 and polymyxin resistance occur via distinct pathways in an epidemic XDR Klebsiella pneumoniae ST258 isolate
ME Pitt, MD Cao, MS Butler, S Ramu, D Ganesamoorthy, MAT Blaskovich, ...
Journal of Antimicrobial Chemotherapy 74 (3), 582-593, 2019
72019
Simulating the dynamics of targeted capture sequencing with CapSim
MD Cao, D Ganesamoorthy, C Zhou, LJM Coin
Bioinformatics 34 (5), 873-874, 2018
62018
Repeat-encoded poly-Q tracts show statistical commonalities across species
K Willadsen, MD Cao, J Wiles, S Balasubramanian, M Bodén
BMC genomics 14 (1), 1-10, 2013
62013
A Biological Compression Model and its Applications
MD Cao, TI Dix, L Allison
Software Tools and Algorithms for Biological Systems, 657-666, 2011
62011
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Articles 1–20