| miRSystem: an integrated system for characterizing enriched functions and pathways of microRNA targets TP Lu, CY Lee, MH Tsai, YC Chiu, CK Hsiao, LC Lai, EY Chuang PloS one 7 (8), e42390, 2012 | 222 | 2012 |
| Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle … DD McKenna, ED Scully, Y Pauchet, K Hoover, R Kirsch, SM Geib, ... Genome biology 17 (1), 1-18, 2016 | 142 | 2016 |
| Unique features of a global human ectoparasite identified through sequencing of the bed bug genome JB Benoit, ZN Adelman, K Reinhardt, A Dolan, M Poelchau, EC Jennings, ... Nature communications 7 (1), 1-10, 2016 | 121 | 2016 |
| The i5k Workspace@ NAL—enabling genomic data access, visualization and curation of arthropod genomes M Poelchau, C Childers, G Moore, V Tsavatapalli, J Evans, CY Lee, H Lin, ... Nucleic acids research 43 (D1), D714-D719, 2015 | 121 | 2015 |
| Deregulated microRNAs in triple-negative breast cancer revealed by deep sequencing YY Chang, WH Kuo, JH Hung, CY Lee, YH Lee, YC Chang, WC Lin, ... Molecular cancer 14 (1), 1-13, 2015 | 112 | 2015 |
| Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome KA Panfilio, IMV Jentzsch, JB Benoit, D Erezyilmaz, Y Suzuki, S Colella, ... Genome biology 20 (1), 64, 2019 | 55 | 2019 |
| DNMT3L promotes quiescence in postnatal spermatogonial progenitor cells HF Liao, WSC Chen, YH Chen, TH Kao, YT Tseng, CY Lee, YC Chiu, ... Development 141 (12), 2402-2413, 2014 | 37 | 2014 |
| Common applications of next-generation sequencing technologies in genomic research CY Lee, YC Chiu, LB Wang, YL Kuo, EY Chuang, LC Lai, MH Tsai Translational Cancer Research 2 (1), 33-45, 2013 | 37 | 2013 |
| Down-regulation of NDRG1 promotes migration of cancer cells during reoxygenation LC Lai, YY Su, KC Chen, MH Tsai, YP Sher, TP Lu, CY Lee, EY Chuang PloS one 6 (8), e24375, 2011 | 23 | 2011 |
| Gene-expression profiling to identify genes related to spontaneous tumor regression in a canine cancer model HC Chiang, ATC Liao, TR Jan, YS Wang, HJ Lei, MH Tsai, MF Chen, ... Veterinary immunology and immunopathology 151 (3-4), 207-216, 2013 | 18 | 2013 |
| CellExpress: a comprehensive microarray-based cancer cell line and clinical sample gene expression analysis online system YF Lee, CY Lee, LC Lai, MH Tsai, TP Lu, EY Chuang Database 2018, 2018 | 14 | 2018 |
| anamiR: integrated analysis of MicroRNA and gene expression profiling TT Wang, CY Lee, LC Lai, MH Tsai, TP Lu, EY Chuang BMC bioinformatics 20 (1), 1-7, 2019 | 5 | 2019 |
| Whole-genome de novo sequencing reveals unique genes that contributed to the adaptive evolution of the mikado pheasant CY Lee, PH Hsieh, LM Chiang, A Chattopadhyay, KY Li, YF Lee, TP Lu, ... GigaScience 7 (5), 2018 | 4 | 2018 |
| SparkINFERNO: A scalable high-throughput pipeline for inferring molecular mechanisms of non-coding genetic variants PP Kuksa, CY Lee, A Amlie-Wolf, P Gangadharan, EE Mlynarski, YF Chou, ... Bioinformatics 36 (12), 3879-3881, 2020 | 3 | 2020 |
| VariED: the first integrated database of gene annotation and expression profiles for variants related to human diseases CY Lee, A Chattopadhyay, LM Chiang, JMJ Juang, LC Lai, MH Tsai, ... Database 2019, 2019 | 2 | 2019 |
| FILER: large-scale, harmonized FunctIonaL gEnomics Repository PPP Kuksa, P Gangadharan, Z Katanic, L Kleidermacher, A Amlie-Wolf, ... bioRxiv, 2021 | | 2021 |
| Using INFERNO to Infer the Molecular Mechanisms Underlying Noncoding Genetic Associations A Amlie-Wolf, PP Kuksa, CY Lee, E Mlynarski, YY Leung, LS Wang Functional Analysis of Long Non-Coding RNAs, 73-91, 2021 | | 2021 |
| Rare variants discovery by extensive whole-genome sequencing of the Han Chinese population in Taiwan: applications to cardiovascular medicine JMJ Juang, TP Lu, MW Su, CW Lin, JH Yang, HW Chu, CH Chen, ... Journal of Advanced Research, 2020 | | 2020 |
| Genome‐wide profiling of the noncoding regulatory mechanisms in Alzheimer’s disease: Genetics/genetic factors of Alzheimer's disease L Kleidermacher, P Kuksa, CY Lee, A Amlie‐Wolf, GD Schellenberg, ... Alzheimer's & Dementia 16, e044268, 2020 | | 2020 |
| Genome-wide profiling of the noncoding regulatory mechanisms in Alzheimer’s Disease L Kleidermacher, P Kuksa, CY Lee, A Amlie-Wolf, GD Schellenberg, ... 2020 Alzheimer's Association International Conference, 2020 | | 2020 |
