Ivan G. Costa

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Citations	5066	3932
h-index	38	36
i10-index	83	70

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Martin ZenkeProfessor of Cell Biology, RWTH Aachen University, Aachen, GermanyVerified email at rwth-aachen.de
Alexander SchliepAssociate Professor, Gothenburg UniversityVerified email at schlieplab.org
Marcilio C. P. de SoutoLIFO/Univ. Orleans, FranceVerified email at univ-orleans.fr
Wolfgang WagnerRWTH Aachen Medical SchoolVerified email at ukaachen.de
Eduardo Gade GusmaoUniversitätsmedizin Göttingen - Institut für PathologieVerified email at med.uni-goettingen.de
Tim BrümmendorfProfessor für Hämatologie und Onkologie, Uniklinik RWTH AachenVerified email at ukaachen.de
Chao-Chung KuoGenomic Core Facility, IZKF, RWTH Aachen UniversityVerified email at rwth-aachen.de
Alexander SchönhuthSenior Researcher, Centrum Wiskunde & Informatica, AmsterdamVerified email at cwi.nl
S KoschmiederVerified email at ukaachen.de
Sonja HaenzelmannMHH HannoverVerified email at mh-hannover.de
Ricardo Bastos C. PrudencioCentro de Informática - UFPE - BrasilVerified email at cin.ufpe.br
Frank TackeProfessor of Medicine, Charité University Medicine BerlinVerified email at charite.de
Pablo Andretta JaskowiakFederal University of Santa Catarina (UFSC)Verified email at ufsc.br
Daniel Sabino A. de AraújoUniversidade Federal do Rio Grande do NorteVerified email at imd.ufrn.br
Zhijian LiRWTH Aachen UniversityVerified email at rwth-aachen.de
Fabio TicconiUniklinik RWTH AachenVerified email at rwth-aachen.de
Ana Carolina LorenaInstituto Tecnológico de AeronáuticaVerified email at ita.br
Teresa Bernarda LudermirProfessor Centro de Informática, Universidade Federal de PernambucoVerified email at cin.ufpe.br
Ricardo J. G. B. CampelloFull Professor, School of Mathematical and Physical Sciences, University of NewcastleVerified email at newcastle.edu.au
Francisco de Assis Tenorio de CarvalhoProfessor of Computer Science, Universidade Federal de PernambucoVerified email at cin.ufpe.br

Ivan G. Costa

Professor, Institute of Computational Genomics, RWTH Aachen

Verified email at rwth-aachen.de - Homepage

Computational Biology Machine Learning Personalized Medicine


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Clustering cancer gene expression data: a comparative study MC De Souto, IG Costa, DS De Araujo, TB Ludermir, A Schliep BMC bioinformatics 9 (1), 1-14, 2008	458	2008
Therapeutic inhibition of inflammatory monocyte recruitment reduces steatohepatitis and liver fibrosis O Krenkel, T Puengel, O Govaere, AT Abdallah, JC Mossanen, ... Hepatology 67 (4), 1270-1283, 2018	275	2018
SARS-CoV-2 infects and replicates in cells of the human endocrine and exocrine pancreas JA Müller, R Groß, C Conzelmann, J Krüger, U Merle, J Steinhart, T Weil, ... Nature Metabolism 3 (2), 149-165, 2021	215	2021
Identification of transcription factor binding sites using ATAC-seq Z Li, MH Schulz, T Look, M Begemann, M Zenke, IG Costa Genome biology 20 (1), 1-21, 2019	194	2019
On the selection of appropriate distances for gene expression data clustering PA Jaskowiak, RJGB Campello, IG Costa BMC bioinformatics 15 (2), 1-17, 2014	155	2014
Human pluripotent stem cell-derived acinar/ductal organoids generate human pancreas upon orthotopic transplantation and allow disease modelling M Hohwieler, A Illing, PC Hermann, T Mayer, M Stockmann, L Perkhofer, ... Gut 66 (3), 473-486, 2017	153	2017
A multiple kernel learning algorithm for drug-target interaction prediction ACA Nascimento, RBC Prudêncio, IG Costa BMC bioinformatics 17 (1), 1-16, 2016	148	2016
Analysis of computational footprinting methods for DNase sequencing experiments EG Gusmao, M Allhoff, M Zenke, IG Costa Nature methods 13 (4), 303-309, 2016	120	2016
DNA methylation levels at individual age-associated CpG sites can be indicative for life expectancy Q Lin, CI Weidner, IG Costa, RE Marioni, MRP Ferreira, IJ Deary, ... Aging (Albany NY) 8 (2), 394, 2016	116	2016
HMGB2 loss upon senescence entry disrupts genomic organization and induces CTCF clustering across cell types A Zirkel, M Nikolic, K Sofiadis, JP Mallm, CA Brackley, H Gothe, ... Molecular cell 70 (4), 730-744. e6, 2018	112	2018
Surface topography guides morphology and spatial patterning of induced pluripotent stem cell colonies G Abagnale, A Sechi, M Steger, Q Zhou, CC Kuo, G Aydin, C Schalla, ... Stem cell reports 9 (2), 654-666, 2017	107	2017
Impact of missing data imputation methods on gene expression clustering and classification MCP De Souto, PA Jaskowiak, IG Costa BMC bioinformatics 16 (1), 1-9, 2015	107	2015
The lncRNA HOTAIR impacts on mesenchymal stem cells via triple helix formation M Kalwa, S Hänzelmann, S Otto, CC Kuo, J Franzen, S Joussen, ... Nucleic acids research 44 (22), 10631-10643, 2016	106	2016
Ranking and selecting clustering algorithms using a meta-learning approach MCP De Souto, RBC Prudencio, RGF Soares, DSA De Araujo, IG Costa, ... 2008 IEEE International Joint Conference on Neural Networks (IEEE World …, 2008	102	2008
CLEVER: clique-enumerating variant finder T Marschall, IG Costa, S Canzar, M Bauer, GW Klau, A Schliep, ... Bioinformatics 28 (22), 2875-2882, 2012	100	2012
Analyzing gene expression time-courses A Schliep, IG Costa, C Steinhoff, A Schonhuth IEEE/ACM Transactions on computational biology and bioinformatics 2 (3), 179-193, 2005	98	2005
Epigenetic age predictions based on buccal swabs are more precise in combination with cell type-specific DNA methylation signatures M Eipel, F Mayer, T Arent, MRP Ferreira, C Birkhofer, U Gerstenmaier, ... Aging (Albany NY) 8 (5), 1034, 2016	87	2016
Myeloid cells in liver and bone marrow acquire a functionally distinct inflammatory phenotype during obesity-related steatohepatitis O Krenkel, J Hundertmark, AT Abdallah, M Kohlhepp, T Puengel, T Roth, ... Gut 69 (3), 551-563, 2020	83	2020
Comparative analysis of clustering methods for gene expression time course data IG Costa, FAT de Carvalho, MCP de Souto Genetics and Molecular Biology 27 (4), 623-631, 2004	83	2004
Detection of RNA–DNA binding sites in long noncoding RNAs CC Kuo, S Hänzelmann, N Sentürk Cetin, S Frank, B Zajzon, JP Derks, ... Nucleic acids research 47 (6), e32-e32, 2019	80	2019

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