Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022 | 227 | 2022 |
CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data VR Marcelino, PTLC Clausen, JP Buchmann, M Wille, JR Iredell, W Meyer, ... Genome biology 21, 1-15, 2020 | 130 | 2020 |
Multi-marker metabarcoding of coral skeletons reveals a rich microbiome and diverse evolutionary origins of endolithic algae VR Marcelino, H Verbruggen Scientific Reports 6 (1), 31508, 2016 | 119 | 2016 |
Meta-transcriptomics reveals a diverse antibiotic resistance gene pool in avian microbiomes VR Marcelino, M Wille, AC Hurt, D González-Acuña, M Klaassen, ... BMC biology 17, 1-11, 2019 | 99 | 2019 |
Beneath the surface: community assembly and functions of the coral skeleton microbiome F Ricci, V Rossetto Marcelino, LL Blackall, M Kühl, M Medina, ... Microbiome 7, 1-10, 2019 | 84 | 2019 |
Ecological niche models of invasive seaweeds VR Marcelino, H Verbruggen Journal of Phycology 51 (4), 606-620, 2015 | 61 | 2015 |
The microbiome and host mucosal interactions in urinary tract diseases B Jones-Freeman, M Chonwerawong, VR Marcelino, AV Deshpande, ... Mucosal Immunology 14 (4), 779-792, 2021 | 51 | 2021 |
High-throughput sequencing for algal systematics MC Oliveira, SI Repetti, C Iha, CJ Jackson, P Díaz-Tapia, KMF Lubiana, ... European Journal of Phycology 53 (3), 256-272, 2018 | 48 | 2018 |
Genomic adaptations to an endolithic lifestyle in the coral-associated alga Ostreobium C Iha, KE Dougan, JA Varela, V Avila, CJ Jackson, KA Bogaert, Y Chen, ... Current Biology 31 (7), 1393-1402. e5, 2021 | 46 | 2021 |
Highly structured prokaryote communities exist within the skeleton of coral colonies VR Marcelino, MJH van Oppen, H Verbruggen The ISME journal 12 (1), 300-303, 2018 | 43 | 2018 |
Taxonomic revision of Halimeda (Bryopsidales, Chlorophyta) in south-western Australia MCM Cremen, JM Huisman, VR Marcelino, H Verbruggen Australian Systematic Botany 29 (1), 41-54, 2016 | 43 | 2016 |
Evolutionary dynamics of chloroplast genomes in low light: a case study of the endolithic green alga Ostreobium quekettii VR Marcelino, MCM Cremen, CJ Jackson, AWD Larkum, H Verbruggen Genome Biology and Evolution 8 (9), 2939-2951, 2016 | 42 | 2016 |
Diversity and stability of coral endolithic microbial communities at a naturally high pCO2 reef VR Marcelino, KM Morrow, MJH van Oppen, DG Bourne, H Verbruggen Molecular Ecology 26 (19), 5344-5357, 2017 | 41 | 2017 |
the future of microbiome‐based therapeutics EL Gulliver, RB Young, M Chonwerawong, GL D'Adamo, T Thomason, ... Alimentary Pharmacology & Therapeutics 56 (2), 192-208, 2022 | 40 | 2022 |
Whole Genome Sequencing of Australian Candida glabrata Isolates Reveals Genetic Diversity and Novel Sequence Types C Biswas, VR Marcelino, S Van Hal, C Halliday, E Martinez, Q Wang, ... Frontiers in Microbiology 9, 2946, 2018 | 40 | 2018 |
The use of taxon-specific reference databases compromises metagenomic classification V R. Marcelino, EC Holmes, TC Sorrell BMC genomics 21 (1), 184, 2020 | 36 | 2020 |
Biodiversity of endolithic fungi in coral skeletons and other reef substrates revealed with 18S rDNA metabarcoding A Góes-Neto, VR Marcelino, H Verbruggen, FF da Silva, F Badotti Coral Reefs 39 (1), 229-238, 2020 | 32 | 2020 |
Phylogenetic position of the coral symbiont Ostreobium (Ulvophyceae) inferred from chloroplast genome data H Verbruggen, VR Marcelino, MD Guiry, MCM Cremen, CJ Jackson Journal of Phycology 53 (4), 790-803, 2017 | 30 | 2017 |
Large diversity of nonstandard genes and dynamic evolution of chloroplast genomes in siphonous green algae (Bryopsidales, Chlorophyta) MCM Cremen, F Leliaert, VR Marcelino, H Verbruggen Genome Biology and Evolution 10 (4), 1048-1061, 2018 | 29 | 2018 |
Metatranscriptomics as a tool to identify fungal species and subspecies in mixed communities–a proof of concept under laboratory conditions VR Marcelino, L Irinyi, JS Eden, W Meyer, EC Holmes, TC Sorrell IMA fungus 10, 1-10, 2019 | 27 | 2019 |