ivan dotu
ivan dotu
Moirai Biodesign
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Ribosome stalling induced by mutation of a CNS-specific tRNA causes neurodegeneration
R Ishimura, G Nagy, I Dotu, H Zhou, XL Yang, P Schimmel, S Senju, ...
Science 345 (6195), 455-459, 2014
Activation of GCN2 kinase by ribosome stalling links translation elongation with translation initiation
R Ishimura, G Nagy, I Dotu, JH Chuang, SL Ackerman
Elife 5, e14295, 2016
Integrating chemical footprinting data into RNA secondary structure prediction
K Zarringhalam, MM Meyer, I Dotu, JH Chuang, P Clote
Public Library of Science 7 (10), e45160, 2012
On lattice protein structure prediction revisited
I Dotu, M Cebrian, P Van Hentenryck, P Clote
IEEE/ACM Transactions on Computational Biology and Bioinformatics 8 (6 …, 2011
RNAiFOLD: a constraint programming algorithm for RNA inverse folding and molecular design
JA Garcia-Martin, P Clote, I Dotu
Journal of bioinformatics and computational biology 11 (02), 1350001, 2013
A novel translational control mechanism involving RNA structures within coding sequences
J Jungfleisch, DD Nedialkova, I Dotu, KE Sloan, N Martinez-Bosch, ...
Genome research 27 (1), 95-106, 2017
Computing folding pathways between RNA secondary structures
I Dotu, WA Lorenz, P Van Hentenryck, P Clote
Nucleic acids research 38 (5), 1711-1722, 2010
Protein structure prediction on the face centered cubic lattice by local search
P Clote, M Cebrian, I Dotu, PV Hentenryck
Proceedings of the Twenty-Third AAAI Conference on Artificial Intelligence …, 2008
Local search-based hybrid algorithms for finding Golomb rulers
C Cotta, I Dotu, AJ Fernandez, P Van Hentenryck
Constraints 12 (3), 263-291, 2007
Scheduling social golfers locally
I Dotú, PV Hentenryck
International Conference on Integration of Artificial Intelligence (AI) and …, 2005
Modeling choices in quasigroup completion: SAT vs. CSP
C Ansótegui, A del Val, I Dotú, C Fernández, F Manya
AAAI, 137-142, 2004
Redundant modeling for the quasigroup completion problem
I Dotú, A Val, M Cebrián
International Conference on Principles and Practice of Constraint …, 2003
Complete RNA inverse folding: computational design of functional hammerhead ribozymes
I Dotu, JA Garcia-Martin, BL Slinger, V Mechery, MM Meyer, P Clote
Nucleic acids research 42 (18), 11752-11762, 2014
RNAiFold 2.0: a web server and software to design custom and Rfam-based RNA molecules
JA Garcia-Martin, I Dotu, P Clote
Nucleic Acids Research 43 (W1), W513-W521, 2015
Genetic architectures of quantitative variation in RNA editing pathways
T Gu, DM Gatti, A Srivastava, EM Snyder, N Raghupathy, P Simecek, ...
Genetics 202 (2), 787-798, 2016
A simple hybrid evolutionary algorithm for finding Golomb rulers
I Dotú, P Van Hentenryck
2005 IEEE Congress on Evolutionary Computation 3, 2018-2023, 2005
A note on low autocorrelation binary sequences
I Dotú, PV Hentenryck
International Conference on Principles and Practice of Constraint …, 2006
Using the fast fourier transform to accelerate the computational search for RNA conformational switches
E Senter, S Sheikh, I Dotu, Y Ponty, P Clote
PloS one 7 (12), e50506, 2012
A memetic approach to golomb rulers
C Cotta, I Dotú, AJ Fernández, PV Hentenryck
Parallel Problem Solving from Nature-PPSN IX, 252-261, 2006
Segmentation and tracking of adherens junctions in 3D for the analysis of epithelial tissue morphogenesis
R Cilla, V Mechery, B Hernandez de Madrid, S Del Signore, I Dotu, ...
PLoS computational biology 11 (4), e1004124, 2015
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