| Instability of the transcription factor Foxp3 leads to the generation of pathogenic memory T cells in vivo X Zhou, SL Bailey-Bucktrout, LT Jeker, C Penaranda, ... Nature immunology 10 (9), 1000-1007, 2009 | 1468 | 2009 |
| The Genome of the Sea Urchin Strongylocentrotus purpuratus E Sodergren, GM Weinstock, EH Davidson, RA Cameron, RA Gibbs, ... Science 314 (5801), 941-952, 2006 | 1243 | 2006 |
| The chemical defensome: environmental sensing and response genes in the Strongylocentrotus purpuratus genome JV Goldstone, A Hamdoun, BJ Cole, M Howard-Ashby, DW Nebert, ... Developmental biology 300 (1), 366-384, 2006 | 295 | 2006 |
| A hybrid approach for the automated finishing of bacterial genomes A Bashir, AA Klammer, WP Robins, CS Chin, D Webster, E Paxinos, ... Nature biotechnology 30 (7), 701-707, 2012 | 227 | 2012 |
| Gene families encoding transcription factors expressed in early development of Strongylocentrotus purpuratus M Howard-Ashby, SC Materna, CT Brown, L Chen, RA Cameron, ... Developmental biology 300 (1), 90-107, 2006 | 160 | 2006 |
| Identification and characterization of homeobox transcription factor genes in Strongylocentrotus purpuratus, and their expression in embryonic development M Howard-Ashby, SC Materna, CT Brown, L Chen, RA Cameron, ... Developmental biology 300 (1), 74-89, 2006 | 151 | 2006 |
| The C2H2 zinc finger genes of Strongylocentrotus purpuratus and their expression in embryonic development SC Materna, M Howard-Ashby, RF Gray, EH Davidson Developmental biology 300 (1), 108-120, 2006 | 103 | 2006 |
| High regulatory gene use in sea urchin embryogenesis: Implications for bilaterian development and evolution M Howard-Ashby, SC Materna, CT Brown, Q Tu, P Oliveri, RA Cameron, ... Developmental biology 300 (1), 27-34, 2006 | 63 | 2006 |
| The complete methylome of Helicobacter pylori UM032 WC Lee, BP Anton, S Wang, P Baybayan, S Singh, M Ashby, EG Chua, ... BMC genomics 16, 1-9, 2015 | 45 | 2015 |
| Identification of differentially expressed splice variants by the proteogenomic pipeline splicify MA Komor, TV Pham, AC Hiemstra, SR Piersma, AS Bolijn, T Schelfhorst, ... Molecular & Cellular Proteomics 16 (10), 1850-1863, 2017 | 33 | 2017 |
| Draft genome sequences of Burkholderia cenocepacia ET12 lineage strains K56-2 and BC7 JJ Varga, L Losada, AM Zelazny, M Kim, J McCorrison, L Brinkac, ... Genome announcements 1 (5), 10.1128/genomea. 00841-13, 2013 | 32 | 2013 |
| Finding the right fit: evaluation of short-read and long-read sequencing approaches to maximize the utility of clinical microbiome data JL Gehrig, DM Portik, MD Driscoll, E Jackson, S Chakraborty, D Gratalo, ... Microbial Genomics 8 (3), 000794, 2022 | 30 | 2022 |
| Comparative genomics reveals the diversity of restriction-modification systems and DNA methylation sites in Listeria monocytogenes P Chen, HC den Bakker, J Korlach, N Kong, DB Storey, EE Paxinos, ... Applied and environmental microbiology 83 (3), e02091-16, 2017 | 30 | 2017 |
| The genome of the sea urchin Strongylocentrotus purpuratus CSUG Sequencing, E Sodergren, GM Weinstock, EH Davidson, ... Science 314 (5801), 941-952, 2006 | 22 | 2006 |
| Long-read sequencing unveils IGH-DUX4 translocation into the silenced IGH allele in B-cell acute lymphoblastic leukemia L Tian, Y Shao, S Nance, J Dang, B Xu, X Ma, Y Li, B Ju, L Dong, ... Nature communications 10 (1), 2789, 2019 | 17 | 2019 |
| Comparing the genomes of Helicobacter pylori clinical strain UM032 and Mice-adapted derivatives Y Khosravi, V Rehvathy, WY Wee, S Wang, P Baybayan, S Singh, ... Gut pathogens 5, 1-6, 2013 | 17 | 2013 |
| Multiple genome sequences of Helicobacter pylori strains of diverse disease and antibiotic resistance backgrounds from Malaysia V Rehvathy, MH Tan, SP Gunaletchumy, X Teh, S Wang, P Baybayan, ... Genome announcements 1 (5), 10.1128/genomea. 00687-13, 2013 | 15 | 2013 |
| The complete methylome of WC Lee, BP Anton, S Wang, P Baybayan, S Singh, M Ashby, EG Chua, ... Helicobacter pylori, 2015 | 13 | 2015 |
| Metagenomic methylation patterns resolve bacterial genomes of unusual size and structural complexity EG Wilbanks, H Doré, MH Ashby, C Heiner, RJ Roberts, JA Eisen The ISME journal 16 (8), 1921-1931, 2022 | 11 | 2022 |
| Greater than 10 kb read lengths routine when sequencing with Pacific Biosciences' XL release C Heiner, S Wang, M Ashby, Y Guo, J Underwood, P Baybayan Journal of Biomolecular Techniques: JBT 24 (Suppl), S43, 2013 | 7 | 2013 |
