|A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes|
KC Miranda, T Huynh, Y Tay, YS Ang, WL Tam, AM Thomson, B Lim, ...
Cell 126 (6), 1203-1217, 2006
|The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins|
P Dehal, Y Satou, RK Campbell, J Chapman, B Degnan, A De Tomaso, ...
Science 298 (5601), 2157-2167, 2002
|MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation|
Y Tay, J Zhang, AM Thomson, B Lim, I Rigoutsos
Nature 455 (7216), 1124-1128, 2008
|Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite|
F Warnecke, P Luginbühl, N Ivanova, M Ghassemian, TH Richardson, ...
Nature 450 (7169), 560-565, 2007
|Dynamic changes in the human methylome during differentiation|
L Laurent, E Wong, G Li, T Huynh, A Tsirigos, CT Ong, HM Low, ...
Genome research 20 (3), 320-331, 2010
|Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs|
Y Tay, L Kats, L Salmena, D Weiss, SM Tan, U Ala, F Karreth, L Poliseno, ...
Cell 147 (2), 344-357, 2011
|The expression of microRNA miR-107 decreases early in Alzheimer's disease and may accelerate disease progression through regulation of β-site amyloid precursor protein-cleaving …|
WX Wang, BW Rajeev, AJ Stromberg, N Ren, G Tang, Q Huang, ...
Journal of Neuroscience 28 (5), 1213-1223, 2008
|Geometric hashing: An overview|
HJ Wolfson, I Rigoutsos
IEEE computational science and engineering 4 (4), 10-21, 1997
|Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm.|
I Rigoutsos, A Floratos
Bioinformatics (Oxford, England) 14 (1), 55-67, 1998
|Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities|
HG Martín, N Ivanova, V Kunin, F Warnecke, KW Barry, AC McHardy, ...
Nature biotechnology 24 (10), 1263-1269, 2006
|Integrated genomic characterization of pancreatic ductal adenocarcinoma|
BJ Raphael, RH Hruban, AJ Aguirre, RA Moffitt, JJ Yeh, C Stewart, ...
Cancer cell 32 (2), 185-203. e13, 2017
|The miR-17/92 cluster: a comprehensive update on its genomics, genetics, functions and increasingly important and numerous roles in health and disease|
E Mogilyansky, I Rigoutsos
Cell Death & Differentiation 20 (12), 1603-1614, 2013
|Accurate phylogenetic classification of variable-length DNA fragments|
AC McHardy, HG Martín, A Tsirigos, P Hugenholtz, I Rigoutsos
Nature methods 4 (1), 63-72, 2007
|The amphioxus genome illuminates vertebrate origins and cephalochordate biology|
LZ Holland, R Albalat, K Azumi, È Benito-Gutiérrez, MJ Blow, ...
Genome research 18 (7), 1100-1111, 2008
|An algorithm for point clustering and grid generation|
M Berger, I Rigoutsos
IEEE Transactions on Systems, Man, and Cybernetics 21 (5), 1278-1286, 1991
|Analysis of 13 cell types reveals evidence for the expression of numerous novel primate-and tissue-specific microRNAs|
E Londin, P Loher, AG Telonis, K Quann, P Clark, Y Jing, E Hatzimichael, ...
Proceedings of the National Academy of Sciences 112 (10), E1106-E1115, 2015
|Use of simulated data sets to evaluate the fidelity of metagenomic processing methods|
K Mavromatis, N Ivanova, K Barry, H Shapiro, E Goltsman, AC McHardy, ...
Nature methods 4 (6), 495-500, 2007
|Genomic analysis of immunity in a Urochordate and the emergence of the vertebrate immune system:“waiting for Godot”|
K Azumi, R De Santis, A De Tomaso, I Rigoutsos, F Yoshizaki, MR Pinto, ...
Immunogenetics 55 (8), 570-581, 2003
|MicroRNA‐134 modulates the differentiation of mouse embryonic stem cells, where it causes post‐transcriptional attenuation of Nanog and LRH1|
YMS Tay, WL Tam, YS Ang, PM Gaughwin, H Yang, W Wang, R Liu, ...
Stem cells 26 (1), 17-29, 2008
|High-resolution metagenomics targets specific functional types in complex microbial communities|
MG Kalyuzhnaya, A Lapidus, N Ivanova, AC Copeland, AC McHardy, ...
Nature biotechnology 26 (9), 1029-1034, 2008