Peng Liu
Peng Liu
Assistant Scientist, Department of Biostatistics and Medical Informatics, UW-Madison
Verified email at
Cited by
Cited by
The role of DNA shape in protein–DNA recognition
R Rohs, SM West, A Sosinsky, P Liu, RS Mann, B Honig
Nature 461 (7268), 1248-1253, 2009
Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins
M Slattery, T Riley, P Liu, N Abe, P Gomez-Alcala, I Dror, T Zhou, R Rohs, ...
Cell 147 (6), 1270-1282, 2011
Characterization of 582 natural and synthetic terminators and quantification of their design constraints
YJ Chen, P Liu, AAK Nielsen, JAN Brophy, K Clancy, T Peterson, ...
Nature methods 10 (7), 659-664, 2013
Nuance in the double-helix and its role in protein–DNA recognition
R Rohs, SM West, P Liu, B Honig
Current opinion in structural biology 19 (2), 171-177, 2009
PKM2 methylation by CARM1 activates aerobic glycolysis to promote tumorigenesis
F Liu, F Ma, Y Wang, L Hao, H Zeng, C Jia, Y Wang, P Liu, IM Ong, B Li, ...
Nature cell biology 19 (11), 1358-1370, 2017
The WD40 domain is required for LRRK2 neurotoxicity
ND Jorgensen, Y Peng, CCY Ho, HJ Rideout, D Petrey, P Liu, WT Dauer
PloS one 4 (12), e8463, 2009
A map of minor groove shape and electrostatic potential from hydroxyl radical cleavage patterns of DNA
EP Bishop, R Rohs, SCJ Parker, SM West, P Liu, RS Mann, B Honig, ...
ACS chemical biology 6 (12), 1314-1320, 2011
Exosome complex orchestrates developmental signaling to balance proliferation and differentiation during erythropoiesis
SC McIver, KR Katsumura, E Davids, P Liu, YA Kang, D Yang, ...
Elife 5, e17877, 2016
Single-nucleotide human disease mutation inactivates a blood-regenerative GATA2 enhancer
AA Soukup, Y Zheng, C Mehta, J Wu, P Liu, M Cao, I Hofmann, Y Zhou, ...
The Journal of clinical investigation 129 (3), 1180-1192, 2019
Integrative analysis with ChIP-seq advances the limits of transcript quantification from RNA-seq
P Liu, R Sanalkumar, EH Bresnick, S Keleş, CN Dewey
Genome research 26 (8), 1124-1133, 2016
Constructing and deconstructing GATA2-regulated cell fate programs to establish developmental trajectories
KD Johnson, DJ Conn, E Shishkova, KR Katsumura, P Liu, S Shen, ...
Journal of Experimental Medicine 217 (11), 2020
Minor Groove Shape and Electrostatics Provide a Molecular Origin for Protein-DNA Specificity
R Rohs, SM West, P Liu, B Honig
Journal of Biomolecular Structure & Dynamics 26 (6), 888-888, 2009
SOX17 integrates HOXA and arterial programs in hemogenic endothelium to drive definitive lympho-myeloid hematopoiesis
HS Jung, G Uenishi, MA Park, P Liu, K Suknuntha, M Raymond, YJ Choi, ...
Cell reports 34 (7), 108758, 2021
MR1 overexpression correlates with poor clinical prognosis in glioma patients
P Kubica, M Lara-Velazquez, M Bam, S Siraj, I Ong, P Liu, R Priya, ...
Neuro-oncology advances 3 (1), vdab034, 2021
SOX17 Is Essential for Integration of Arterial and HOXA Programs in Hemogenic Endothelium
HS Jung, GI Uenishi, MA Park, P Liu, M Raymond, J Thomson, I Ong, ...
Blood 134, 2476, 2019
Proteomic and Genomic Methylation Signatures of Idiopathic Subglottic Stenosis
SS Schoeff, X Shi, WG Young, CW Whited, RS Soni, P Liu, IM Ong, ...
The Laryngoscope 131 (2), E540-E546, 2021
PRAM: a novel pooling approach for discovering intergenic transcripts from large-scale RNA sequencing experiments
P Liu, AA Soukup, EH Bresnick, CN Dewey, S Keleş
Genome research 30 (11), 1655-1666, 2020
Transcriptional elongation machinery controls vulnerability of breast cancer cells to PRC2 inhibitors
NT Chan, P Liu, J Huang, Y Wang, I Ong, L Li, W Xu
bioRxiv, 2020
Loss-of-Function and Gain-of-Function Consequences of GATA2 Disease Mutations
KR Katsumura, P Liu, C Mehta, KJ Hewitt, A Soukup, IJF de Andrade, ...
Blood 134, 2519, 2019
GATA2-Dependent Developmental and Regenerative Networks
A Soukup, KD Johnson, DJ Conn, E Shishkova, KR Katsumura, P Liu, ...
Blood 134, 1182, 2019
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