Comparative analysis of homology models of the Ah receptor ligand binding domain: verification of structure-function predictions by site-directed mutagenesis of a non … D Fraccalvieri, AA Soshilov, SI Karchner, DG Franks, A Pandini, L Bonati, ... Biochemistry 52 (4), 714, 2013 | 75 | 2013 |
AHR Ligands: Promiscuity in Binding and Diversity in Response D DeGroot, G He, D Fraccalvieri, L Bonati, A Pandini, MS Denison The AH Receptor in Biology and Toxicology, 63-79, 2011 | 59 | 2011 |
Conformational and functional analysis of molecular dynamics trajectories by Self-Organising Maps D Fraccalvieri, A Pandini, F Stella, L Bonati BMC Bioinformatics 12 (1), 158, 2011 | 58 | 2011 |
Specific Ligand Binding Domain Residues Confer Low Dioxin Responsiveness to AHR1β of Xenopus laevis C Odio, SA Holzman, MS Denison, D Fraccalvieri, L Bonati, DG Franks, ... Biochemistry, 2013 | 28 | 2013 |
An aryl hydrocarbon receptor from the salamander ambystoma mexicanum exhibits low sensitivity to 2, 3, 7, 8-tetrachlorodibenzo-p-dioxin J Shoots, D Fraccalvieri, DG Franks, MS Denison, ME Hahn, L Bonati, ... Environmental science & technology 49 (11), 6993, 2015 | 25 | 2015 |
Artificial Neural Networks For Efficient Clustering Of Conformational Ensembles And Their Potential For Medicinal Chemistry. A Pandini, D Fraccalvieri, L Bonati Current topics in medicinal chemistry, 2013 | 22 | 2013 |
Functional annotation of the mesophilic-like character of mutants in a cold-adapted enzyme by Self-Organising Map analysis of their molecular dynamics D Fraccalvieri, M Tiberti, A Pandini, L Bonati, E Papaleo Molecular BioSystems, 2012 | 21 | 2012 |
Ginsenosides are novel naturally-occurring aryl hydrocarbon receptor ligands Q Hu, G He, J Zhao, A Soshilov, MS Denison, A Zhang, H Yin, ... PloS one 8 (6), e66258, 2013 | 19 | 2013 |
Identification of potential aryl hydrocarbon receptor ligands by virtual screening of industrial chemicals M Larsson, D Fraccalvieri, CD Andersson, L Bonati, A Linusson, ... Environmental Science and Pollution Research, 1-14, 2017 | 17 | 2017 |
Design of gliadin peptide analogues with low affinity for the celiac disease associated HLA–DQ2 protein D Fraccalvieri, S Motta, G Galliani, L Cavaletti, L Bonati Molecular BioSystems 10 (8), 2064-2073, 2014 | 4 | 2014 |
Self Organizing Maps to efficiently cluster and functionally interpret protein conformational ensembles D Fraccalvieri, L Bonati, F Stella arXiv preprint arXiv:1309.7694, 2013 | 4 | 2013 |
Comparison of protein dynamics: a new methodology based on self-organizing maps D FRACCALVIERI Università degli Studi di Milano-Bicocca, 2011 | 1 | 2011 |
Functional interpretation of protein conformational ensembles using self-organizing maps and network components D Fraccalvieri, L Bonati, A Pandini, F Stella 3DSIG 2013: Structural Bioinformatics And Computational Biophysics-19-20 July, 2013 | | 2013 |
Functional annotation of protein conformations by Self-Organizing Maps D Fraccalvieri, A Pandini, F Stella, L Bonati ECCB'12: 11th European Conference on Computational Biology, 2012 | | 2012 |
A new methodology for the comparison of protein dynamics based on self-organizing maps D Fraccalvieri, F Stella, A Pandini, L Bonati 3DSIG 2011: Structural Bioinformatics & Computational Biophysics, 2011 | | 2011 |
The role of flexibility in binding via Molecular Dynamics simulations: promiscuity and transient complexes formation D Fraccalvieri HPC-Europa2 Report 2010, 2010 | | 2010 |
Comparison of proteins flexibilities by self-organizing maps: the test case of SH3 and its mutants D Fraccalvieri, A Pandini, L Bonati BITS 2009, 2009 | | 2009 |
Comparison of protein flexibilities: a study case on wild type and mutants of the SH3 domain D FRACCALVIERI, L BONATI, A PANDINI ECCB08" European Conference on Computational Biology 2008", 2008 | | 2008 |