| xCell: digitally portraying the tissue cellular heterogeneity landscape D Aran, Z Hu, AJ Butte Genome Biology 18, 220, 2017 | 507 | 2017 |
| Systematic pan-cancer analysis of tumour purity D Aran, M Sirota, AJ Butte Nature communications 6 (1), 1-12, 2015 | 475 | 2015 |
| Genome-wide survey reveals predisposing diabetes type 2-related DNA methylation variations in human peripheral blood G Toperoff, D Aran, JD Kark, M Rosenberg, T Dubnikov, B Nissan, ... Human molecular genetics 21 (2), 371-383, 2012 | 302 | 2012 |
| Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage D Aran, AP Looney, L Liu, E Wu, V Fong, A Hsu, S Chak, RP Naikawadi, ... Nature immunology 20 (2), 163-172, 2019 | 293 | 2019 |
| DNA methylation of distal regulatory sites characterizes dysregulation of cancer genes D Aran, S Sabato, A Hellman Genome biology 14 (3), 1-14, 2013 | 267 | 2013 |
| Replication timing-related and gene body-specific methylation of active human genes D Aran, G Toperoff, M Rosenberg, A Hellman Human molecular genetics 20 (4), 670-680, 2011 | 252 | 2011 |
| Comprehensive analysis of normal adjacent to tumor transcriptomes D Aran, R Camarda, J Odegaard, H Paik, B Oskotsky, G Krings, A Goga, ... Nature communications 8 (1), 1-14, 2017 | 160 | 2017 |
| DNA methylation of transcriptional enhancers and cancer predisposition D Aran, A Hellman Cell 154 (1), 11-13, 2013 | 136 | 2013 |
| Cross-tissue analysis of gene and protein expression in normal and cancer tissues I Kosti, N Jain, D Aran, AJ Butte, M Sirota Scientific reports 6 (1), 1-16, 2016 | 100 | 2016 |
| Aging is associated with highly defined epigenetic changes in the human epidermis G Raddatz, S Hagemann, D Aran, J Söhle, PP Kulkarni, L Kaderali, ... Epigenetics & chromatin 6 (1), 36, 2013 | 63 | 2013 |
| Widespread parainflammation in human cancer D Aran, A Lasry, A Zinger, M Biton, E Pikarsky, A Hellman, AJ Butte, ... Genome biology 17 (1), 1-14, 2016 | 49 | 2016 |
| Intratumoral CD4+ T Cells Mediate Anti-tumor Cytotoxicity in Human Bladder Cancer DY Oh, SS Kwek, SS Raju, T Li, E McCarthy, E Chow, D Aran, A Ilano, ... Cell, 2020 | 31 | 2020 |
| Premature aging of leukocyte DNA methylation is associated with type 2 diabetes prevalence G Toperoff, JD Kark, D Aran, H Nassar, WA Ahmad, R Sinnreich, D Azaiza, ... Clinical epigenetics 7 (1), 35, 2015 | 29 | 2015 |
| Comprehensive transcriptomic analysis of cell lines as models of primary tumors across 22 tumor types K Yu, B Chen, D Aran, J Charalel, C Yau, DM Wolf, LJ van‘t Veer, AJ Butte, ... Nature communications 10 (1), 1-11, 2019 | 24 | 2019 |
| Precision annotation of digital samples in NCBI’s gene expression omnibus D Hadley, J Pan, O El-Sayed, J Aljabban, I Aljabban, TD Azad, ... Scientific data 4, 170125, 2017 | 17 | 2017 |
| CD161 contributes to prenatal immune suppression of IFN-γ–producing PLZF+ T cells J Halkias, E Rackaityte, SL Hillman, D Aran, VF Mendoza, LR Marshall, ... The Journal of clinical investigation 129 (9), 2019 | 15 | 2019 |
| Global transcriptome analysis of RNA abundance regulation by ADAR in lung adenocarcinoma MF Sharpnack, B Chen, D Aran, I Kosti, DD Sharpnack, DP Carbone, ... EBioMedicine 27, 167-175, 2018 | 15 | 2018 |
| Digitally deconvolving the tumor microenvironment D Aran, AJ Butte Genome Biology 17 (1), 1-3, 2016 | 15 | 2016 |
| Unmasking risk loci: DNA methylation illuminates the biology of cancer predisposition: analyzing DNA methylation of transcriptional enhancers reveals missed regulatory links … D Aran, A Hellman Bioessays 36 (2), 184-190, 2014 | 11 | 2014 |
| Heterogeneity in HIV and cellular transcription profiles in cell line models of latent and productive infection: implications for HIV latency S Telwatte, S Morón-López, D Aran, P Kim, C Hsieh, S Joshi, M Montano, ... Retrovirology 16 (1), 1-23, 2019 | 6 | 2019 |
Atul J. ButteDirector, Bakar Computational Health Sciences Institute, University of California, San FranciscoVerified email at ucsf.edu
