|xCell: digitally portraying the tissue cellular heterogeneity landscape|
D Aran, Z Hu, AJ Butte
Genome Biology 18, 220, 2017
|Systematic pan-cancer analysis of tumour purity|
D Aran, M Sirota, AJ Butte
Nature communications 6 (1), 1-12, 2015
|Genome-wide survey reveals predisposing diabetes type 2-related DNA methylation variations in human peripheral blood|
G Toperoff, D Aran, JD Kark, M Rosenberg, T Dubnikov, B Nissan, ...
Human molecular genetics 21 (2), 371-383, 2012
|Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage|
D Aran, AP Looney, L Liu, E Wu, V Fong, A Hsu, S Chak, RP Naikawadi, ...
Nature immunology 20 (2), 163-172, 2019
|DNA methylation of distal regulatory sites characterizes dysregulation of cancer genes|
D Aran, S Sabato, A Hellman
Genome biology 14 (3), 1-14, 2013
|Replication timing-related and gene body-specific methylation of active human genes|
D Aran, G Toperoff, M Rosenberg, A Hellman
Human molecular genetics 20 (4), 670-680, 2011
|Comprehensive analysis of normal adjacent to tumor transcriptomes|
D Aran, R Camarda, J Odegaard, H Paik, B Oskotsky, G Krings, A Goga, ...
Nature communications 8 (1), 1-14, 2017
|DNA methylation of transcriptional enhancers and cancer predisposition|
D Aran, A Hellman
Cell 154 (1), 11-13, 2013
|Cross-tissue analysis of gene and protein expression in normal and cancer tissues|
I Kosti, N Jain, D Aran, AJ Butte, M Sirota
Scientific reports 6 (1), 1-16, 2016
|Aging is associated with highly defined epigenetic changes in the human epidermis|
G Raddatz, S Hagemann, D Aran, J Söhle, PP Kulkarni, L Kaderali, ...
Epigenetics & chromatin 6 (1), 36, 2013
|Widespread parainflammation in human cancer|
D Aran, A Lasry, A Zinger, M Biton, E Pikarsky, A Hellman, AJ Butte, ...
Genome biology 17 (1), 1-14, 2016
|Intratumoral CD4+ T Cells Mediate Anti-tumor Cytotoxicity in Human Bladder Cancer|
DY Oh, SS Kwek, SS Raju, T Li, E McCarthy, E Chow, D Aran, A Ilano, ...
|Premature aging of leukocyte DNA methylation is associated with type 2 diabetes prevalence|
G Toperoff, JD Kark, D Aran, H Nassar, WA Ahmad, R Sinnreich, D Azaiza, ...
Clinical epigenetics 7 (1), 35, 2015
|Comprehensive transcriptomic analysis of cell lines as models of primary tumors across 22 tumor types|
K Yu, B Chen, D Aran, J Charalel, C Yau, DM Wolf, LJ van‘t Veer, AJ Butte, ...
Nature communications 10 (1), 1-11, 2019
|Precision annotation of digital samples in NCBI’s gene expression omnibus|
D Hadley, J Pan, O El-Sayed, J Aljabban, I Aljabban, TD Azad, ...
Scientific data 4, 170125, 2017
|CD161 contributes to prenatal immune suppression of IFN-γ–producing PLZF+ T cells|
J Halkias, E Rackaityte, SL Hillman, D Aran, VF Mendoza, LR Marshall, ...
The Journal of clinical investigation 129 (9), 2019
|Global transcriptome analysis of RNA abundance regulation by ADAR in lung adenocarcinoma|
MF Sharpnack, B Chen, D Aran, I Kosti, DD Sharpnack, DP Carbone, ...
EBioMedicine 27, 167-175, 2018
|Digitally deconvolving the tumor microenvironment|
D Aran, AJ Butte
Genome Biology 17 (1), 1-3, 2016
|Unmasking risk loci: DNA methylation illuminates the biology of cancer predisposition: analyzing DNA methylation of transcriptional enhancers reveals missed regulatory links …|
D Aran, A Hellman
Bioessays 36 (2), 184-190, 2014
|Heterogeneity in HIV and cellular transcription profiles in cell line models of latent and productive infection: implications for HIV latency|
S Telwatte, S Morón-López, D Aran, P Kim, C Hsieh, S Joshi, M Montano, ...
Retrovirology 16 (1), 1-23, 2019