Takip et
Mingchen Chen
Mingchen Chen
Center for Theoretical Biological Physics, Rice University
rice.edu üzerinde doğrulanmış e-posta adresine sahip
Başlık
Alıntı yapanlar
Alıntı yapanlar
Yıl
Exploring the aggregation free energy landscape of the amyloid-β protein (1–40)
W Zheng, MY Tsai, M Chen, PG Wolynes
Proceedings of the National Academy of Sciences 113 (42), 11835-11840, 2016
1292016
Aggregation landscapes of Huntingtin exon 1 protein fragments and the critical repeat length for the onset of Huntington’s disease
M Chen, PG Wolynes
Proceedings of the National Academy of Sciences 114 (17), 4406-4411, 2017
832017
Assemblies of calcium/calmodulin-dependent kinase II with actin and their dynamic regulation by calmodulin in dendritic spines
Q Wang, M Chen, NP Schafer, C Bueno, SS Song, A Hudmon, ...
Proceedings of the National Academy of Sciences 116 (38), 18937-18942, 2019
482019
Surveying biomolecular frustration at atomic resolution
M Chen, X Chen, NP Schafer, C Clementi, EA Komives, DU Ferreiro, ...
Nature communications 11 (1), 5944, 2020
452020
The aggregation free energy landscapes of polyglutamine repeats
M Chen, MY Tsai, W Zheng, PG Wolynes
Journal of the American Chemical Society 138 (46), 15197-15203, 2016
402016
Exploring the interplay between fibrillization and amorphous aggregation channels on the energy landscapes of tau repeat isoforms
X Chen, M Chen, NP Schafer, PG Wolynes
Proceedings of the National Academy of Sciences 117 (8), 4125-4130, 2020
372020
Protein folding and structure prediction from the ground up: The atomistic associative memory, water mediated, structure and energy model
M Chen, X Lin, W Zheng, JN Onuchic, PG Wolynes
The Journal of Physical Chemistry B 120 (33), 8557-8565, 2016
362016
Energy landscapes of a mechanical prion and their implications for the molecular mechanism of long-term memory
M Chen, W Zheng, PG Wolynes
Proceedings of the National Academy of Sciences 113 (18), 5006-5011, 2016
342016
OpenAWSEM with Open3SPN2: A fast, flexible, and accessible framework for large-scale coarse-grained biomolecular simulations
W Lu, C Bueno, NP Schafer, J Moller, S Jin, X Chen, M Chen, X Gu, ...
PLoS computational biology 17 (2), e1008308, 2021
312021
AWSEM-Suite: a protein structure prediction server based on template-guided, coevolutionary-enhanced optimized folding landscapes
S Jin, VG Contessoto, M Chen, NP Schafer, W Lu, X Chen, C Bueno, ...
Nucleic acids research 48 (W1), W25-W30, 2020
232020
Surveying the energy landscapes of Aβ fibril polymorphism
M Chen, NP Schafer, PG Wolynes
The Journal of Physical Chemistry B 122 (49), 11414-11430, 2018
232018
Protein folding and structure prediction from the ground up II: AAWSEM for α/β proteins
M Chen, X Lin, W Lu, JN Onuchic, PG Wolynes
The journal of physical chemistry B 121 (15), 3473-3482, 2017
232017
Template-guided protein structure prediction and refinement using optimized folding landscape force fields
M Chen, X Lin, W Lu, NP Schafer, JN Onuchic, PG Wolynes
Journal of chemical theory and computation 14 (11), 6102-6116, 2018
192018
Protein structure prediction in CASP13 using AWSEM-suite
S Jin, M Chen, X Chen, C Bueno, W Lu, NP Schafer, X Lin, JN Onuchic, ...
Journal of chemical theory and computation 16 (6), 3977-3988, 2020
172020
Forging tools for refining predicted protein structures
X Lin, NP Schafer, W Lu, S Jin, X Chen, M Chen, JN Onuchic, ...
Proceedings of the National Academy of Sciences 116 (19), 9400-9409, 2019
162019
The associative memory, water mediated, structure and energy model (AWSEM)-Amylometer: Predicting amyloid propensity and fibril topology using an optimized folding landscape model
M Chen, NP Schafer, W Zheng, PG Wolynes
ACS chemical neuroscience 9 (5), 1027-1039, 2017
152017
Multiple binding configurations of Fis protein pairs on DNA: Facilitated dissociation versus cooperative dissociation
MY Tsai, W Zheng, M Chen, PG Wolynes
Journal of the American Chemical Society 141 (45), 18113-18126, 2019
142019
Molecular-replacement phasing using predicted protein structures from AWSEM-Suite
S Jin, MD Miller, M Chen, NP Schafer, X Lin, X Chen, GN Phillips, ...
IUCrJ 7 (6), 1168-1178, 2020
122020
Exploring the F-actin/CPEB3 interaction and its possible role in the molecular mechanism of long-term memory
X Gu, NP Schafer, Q Wang, SS Song, M Chen, MN Waxham, PG Wolynes
Proceedings of the National Academy of Sciences 117 (36), 22128-22134, 2020
92020
Computationally exploring the mechanism of bacteriophage T7 gp4 helicase translocating along ssDNA
S Jin, C Bueno, W Lu, Q Wang, M Chen, X Chen, PG Wolynes, Y Gao
Proceedings of the National Academy of Sciences 119 (32), e2202239119, 2022
82022
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